Well, tonight I pulled the pan and did the change! Wasn't to tough besides getting the seal for the filter out of it's hole... that was a bit of a PITA but got it out eventually.
The oil was definatly brown and stunk like it was burnt. There wasn't anything major metal wise in the pan just maybe a small spoon full of the filings or whatever the grey sludge on the magnet is called.
Just pulling the pan I figured I got a little over 4L of fluid out of it, I tried to catch as much as I could but my oil pan wasn't big enough so I bottled close to 4L plus all that was on the floor so maybe 4.25L or 4.5L, I think that's maybe a little less then 1/2 of what's in the entire system so again maybe in a oil change or two I'll change everything again then I'd probably have cleaned out most the old junk.
But put it all back together, filled it up with approx what I took out including a 700ml bottle of Lucus transmission fix and took it for a short drive and it seemed fine. So tomorrow I'll take it to work, then when I come home I'll really let it warm up good maybe run for 45min total and then check my levels to make sure they are spot on. I have a small road trip coming up this weekend so I'm hopeful everything will be ok