yea go to the junkyard. its actually not that bad. i have a 4x4 5 speed now, and the pedal assembly for the clutch bolts to the firewall on its own. it doesnt have anything to do with the brake pedal assembly you just need to get the skinny brake pedal. if i were you id:
buy tranny from
www.car-parts.com ($200-$800 depending on miles)
new slave cyl from napa- ($80)
new master cyl from napa- ($60)
pedal assembly and brake from
www.car-parts.com ($100 at max)
then go to the local dealer and get the hydraulic line from the mater cylinder to slave cylinder maybe $50 bucks
the master cylinder comes with a new rod and bushing to connect the clutch pedal. ask me how i know? i just replaced everything in my system.
and not to forget, id probably put a new clutch in as well. clutch kit is $250